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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61175590_61176019_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61175590 - 61176019
Intron Length:
430

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGGTGC
5'SS Class:
major
3'SS Sequence:
CTTCCTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTAAA
U12 Branch Point Sequence:
TGTTCCTTACCC
Flanking Amino Acid:
MLLDHPCSHRTPLAAMMPV
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
62.6
38.6
Major BPS
64.8
0.37
1.2
67.9
36.3
Major PPT
82.7
0.73
0.8
80.1
31.9
Minor 5ss
37.7
-1.4
3.2
49.7
46.9
Minor BPS
76.2
0.8
1.6
83.37
36.3

Associated Gene:

Gene:
GNPNAT1
Ensembl Gene ID:
ENSAPLG00000002584
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002612
61175060 - 61179456
4397