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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61176967_61177622_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61176967 - 61177622
Intron Length:
656

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGAGTAGA
5'SS Class:
major
3'SS Sequence:
TCTGCTCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAA
U12 Branch Point Sequence:
CTAACAGTGACT
Flanking Amino Acid:
TGVVSPEQFIKTFEHMKRSG
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1
68.2
38.6
Major BPS
74.2
0.6
0.9
75.7
28
Major PPT
75.2
0.57
0.8
68.7
31.8
Minor 5ss
31.8
-2.1
2.7
38.9
40.3
Minor BPS
45.2
-0.2
2.3
65.87
44.5

Associated Gene:

Gene:
GNPNAT1
Ensembl Gene ID:
ENSAPLG00000002584
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002612
61175060 - 61179456
4397