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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61177751_61178215_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61177751 - 61178215
Intron Length:
465

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTCT
5'SS Class:
strong_major
3'SS Sequence:
TGCATTTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
GTGTTCTCAACT
Flanking Amino Acid:
EHKFTHSCAKRGRIEDVVVS
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
74.1
37.2
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
77.2
0.61
0.9
71.5
38.2
Minor 5ss
59.1
0.31
2.3
74.3
42
Minor BPS
68.1
0.65
1.5
80.75
40.9

Associated Gene:

Gene:
GNPNAT1
Ensembl Gene ID:
ENSAPLG00000002584
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002612
61175060 - 61179456
4397