Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61178278_61179308_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

61178278 - 61179308

Intron Length:

1031

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACT|GTAAGTATT

5'SS Class:

major

3'SS Sequence:

CTGTCTCTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTCAT

U12 Branch Point Sequence:

TTTCATTTAACT

Flanking Amino Acid:

GECRGKQLGKLLTSTLTLLS

Intron Amino Acid Position:

157

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.7

0.68

1.1

84.2

33.6

Major BPS

91.2

1.02

0.7

91.7

20.2

Major PPT

83.4

0.75

0.8

80.8

31.2

Minor 5ss

44.6

-0.6

2.9

70.4

39.5

Minor BPS

75.2

0.87

1.4

90.66

32.3

Associated Gene:

Gene:

GNPNAT1

Ensembl Gene ID:

ENSAPLG00000002584

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002612

61175060 - 61179456

4397