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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61185047_61186004_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61185047 - 61186004
Intron Length:
958

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATGTTT
5'SS Class:
major
3'SS Sequence:
ACTTTTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TATGTATTACTT
Flanking Amino Acid:
PNAGFVHQLQEYEAIYLAKL
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
77.5
33.1
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
80.9
0.69
0.8
73.4
36.5
Minor 5ss
37.3
-1.4
3.5
55.5
48.6
Minor BPS
48.5
-0
1.9
69.42
42

Associated Gene:

Gene:
STYX
Ensembl Gene ID:
ENSAPLG00000002535
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002560
61184474 - 61191651
7178