Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61186078_61186686_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

61186078 - 61186686

Intron Length:

609

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGAACA

5'SS Class:

strong_major

3'SS Sequence:

TTCTCTTGTTAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTCCAC

U12 Branch Point Sequence:

TTCCACTGAAGA

Flanking Amino Acid:

YIMETFGVKYRDAFTYVQER

Intron Amino Acid Position:

149

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.2

0.99

0.8

83.4

27.8

Major BPS

67.4

0.43

1.3

78.4

35.2

Major PPT

0.52

1.1

78.7

33.6

Minor 5ss

33.8

-1.9

2.9

41.4

44.7

Minor BPS

48.3

-0.1

1.9

62.87

42.9

Associated Gene:

Gene:

STYX

Ensembl Gene ID:

ENSAPLG00000002535

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028643

61182326 - 61191651

9326

ENSAPLT00000002560

61184474 - 61191651

7178