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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61206211_61207237_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61206211 - 61207237
Intron Length:
1027

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTCTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TGTTCTAAAACC
Flanking Amino Acid:
DREIQRTLMELLNQMDGFDT
Intron Amino Acid Position:
274

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.4
29.1
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
83.6
0.76
0.7
76.9
31.9
Minor 5ss
28.5
-2.5
3
35.5
41.2
Minor BPS
55.6
0.15
1.9
71.93
39.2

Associated Gene:

Gene:
PSMC6
Ensembl Gene ID:
ENSAPLG00000002349
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002440
61202331 - 61215022
12692