Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61207300_61207657_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

61207300 - 61207657

Intron Length:

358

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGGCTC

5'SS Class:

strong_major

3'SS Sequence:

TGGTATTCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTAAC

U12 Branch Point Sequence:

AGGATTGTAACT

Flanking Amino Acid:

IIFMDEIDAIGGRRFSEGTS

Intron Amino Acid Position:

253

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.6

0.75

69.6

41.1

Major BPS

74.5

0.61

1.1

75.6

36.6

Major PPT

76.3

0.59

69.9

41.2

Minor 5ss

35.5

-1.7

3.4

47.8

42.4

Minor BPS

47.2

-0.1

62.97

41.5

Associated Gene:

Gene:

PSMC6

Ensembl Gene ID:

ENSAPLG00000002349

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002440

61202331 - 61215022

12692