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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61209497_61209931_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61209497 - 61209931
Intron Length:
435

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTATTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTC
Flanking Amino Acid:
ALDMTTLTIMRYLPREVDPL
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
75.7
34.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92.5
0.96
0.7
85.7
33.4
Minor 5ss
30.4
-2.2
3.5
42.4
45.1
Minor BPS
67.3
0.52
1.5
77.16
33.3

Associated Gene:

Gene:
PSMC6
Ensembl Gene ID:
ENSAPLG00000002349
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002440
61202331 - 61215022
12692