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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61210000_61213652_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61210000 - 61213652
Intron Length:
3653

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCTGAT
5'SS Class:
major
3'SS Sequence:
TCTTTGTCACTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTCTTTGTCACT
Flanking Amino Acid:
PRYVVGCRRQLDKSKLKPGT
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.2
72.3
39.5
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
72.7
0.51
0.9
67
39.3
Minor 5ss
38.5
-1.3
3.5
57.3
47.4
Minor BPS
48
-0
2.4
74.22
43.6

Associated Gene:

Gene:
PSMC6
Ensembl Gene ID:
ENSAPLG00000002349
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002440
61202331 - 61215022
12692