About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61213706_61213911_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61213706 - 61213911
Intron Length:
206

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTACG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTTTATATGATT
Flanking Amino Acid:
EVLKQLTEEKFIVKATNGPR
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
77.4
37.4
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
84.7
0.78
0.7
78
30.8
Minor 5ss
38.5
-1.3
2.7
48.6
40.2
Minor BPS
56.1
0.27
1.8
80.8
34.8

Associated Gene:

Gene:
PSMC6
Ensembl Gene ID:
ENSAPLG00000002349
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002440
61202331 - 61215022
12692