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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61223244_61224597_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61223244 - 61224597
Intron Length:
1354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
ATGTTGTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTGAT
U12 Branch Point Sequence:
AAATGTGTAACA
Flanking Amino Acid:
LESDYFRYYKVNLKKPCPFW
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
85.1
25.6
Major BPS
67.4
0.43
1.1
57.1
41.8
Major PPT
75.4
0.57
0.9
70
40.8
Minor 5ss
46.5
-0.4
2.7
61.9
36.7
Minor BPS
46.3
-0.2
2.3
59.47
40.4

Associated Gene:

Gene:
ERO1A
Ensembl Gene ID:
ENSAPLG00000001303
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001569
61221691 - 61236376
14686