Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_6124060_6124428_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6124060 - 6124428

Intron Length:

369

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGTCCT

5'SS Class:

strong_major

3'SS Sequence:

ACGTATTAAACAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTGAT

U12 Branch Point Sequence:

ATCTTCTTGACG

Flanking Amino Acid:

KAKNYDKVEKLFQRCLMKVL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.97

0.8

80.5

33.9

Major BPS

78.8

0.71

67.6

40.6

Major PPT

60.5

0.24

1.1

55.2

43.1

Minor 5ss

31.4

-2.1

2.9

42.1

44.5

Minor BPS

69.2

0.46

1.3

68.13

39.7

Associated Gene:

Gene:

CSTF3

Ensembl Gene ID:

ENSAPLG00000007217

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048458

6091621 - 6140480

48860

ENSAPLT00000045199

6091621 - 6140480

48860

ENSAPLT00000007566

6091621 - 6140600

48980