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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61241939_61243350_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61241939 - 61243350
Intron Length:
1412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTGTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
TTTGTCTTAAAG
Flanking Amino Acid:
SSANVYLESKGTSVCQAILV
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
74.9
37
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
84.4
0.77
0.8
76.5
37.6
Minor 5ss
30.2
-2.3
3.3
38.5
46.8
Minor BPS
67.3
0.41
1.6
72.05
40.8

Associated Gene:

Gene:
GPR137C
Ensembl Gene ID:
ENSAPLG00000001064
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001105
61240253 - 61249003
8751