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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61243580_61244312_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61243580 - 61244312
Intron Length:
733

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
ATCTTCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
TGTGATTTAACT
Flanking Amino Acid:
VKCAAEFNKYKVLLYLGSIL
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
79
35.3
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
82.3
0.73
0.8
73.9
36.2
Minor 5ss
36.1
-1.6
3.3
49.5
41.2
Minor BPS
66.3
0.59
1.6
81.57
39.9

Associated Gene:

Gene:
GPR137C
Ensembl Gene ID:
ENSAPLG00000001064
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001105
61240253 - 61249003
8751