Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61244357_61248631_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

61244357 - 61248631

Intron Length:

4275

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGATTTTT

5'SS Class:

strong_major

3'SS Sequence:

TTTTCCCCCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CAGTAAT

U12 Branch Point Sequence:

TGCTCTGCAATT

Flanking Amino Acid:

LCLLTLYFAEVIFKVKCAAE

Intron Amino Acid Position:

125

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.6

0.82

0.9

85.8

25.2

Major BPS

64.3

0.36

1.2

65.3

38.6

Major PPT

77.9

0.63

0.7

70.8

30.3

Minor 5ss

40.8

-1

58.4

46.2

Minor BPS

47.8

-0

2.2

68.3

43.3

Associated Gene:

Gene:

GPR137C

Ensembl Gene ID:

ENSAPLG00000001064

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000001105

61240253 - 61249003

8751