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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_612575_613605_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
612575 - 613605
Intron Length:
1031

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TATGGTCTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TAGATTCTAACC
Flanking Amino Acid:
QKLREKMAVDDTLKDEMDLN
Intron Amino Acid Position:
611

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
75.9
35.2
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
73.9
0.54
0.9
70.4
40.9
Minor 5ss
33.7
-1.9
2.9
38
41
Minor BPS
49.8
-0
1.7
60.47
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016293
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016998
612390 - 642461
30072