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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61260082_61261298_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61260082 - 61261298
Intron Length:
1217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGATGG
5'SS Class:
major
3'SS Sequence:
GTATCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTATAAC
U12 Branch Point Sequence:
TGCAGTATAACC
Flanking Amino Acid:
HLKLMGAPLVTEVAEDPEKV
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
57.8
41.9
Major BPS
60.2
0.25
1.3
64
39.8
Major PPT
81.7
0.71
0.9
73.2
41.8
Minor 5ss
43.6
-0.7
2.8
52.9
46.1
Minor BPS
45.6
-0.3
2
56.49
42

Associated Gene:

Gene:
TXNDC16
Ensembl Gene ID:
ENSAPLG00000014927
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015590
61254603 - 61289214
34612