About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_6126031_6126123_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6126031 - 6126123
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTGCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTATATTTAATA
Flanking Amino Acid:
KIGMEIMSYQIWVDYINFLK
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
89.6
24.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
78.9
0.65
0.8
76.3
32.4
Minor 5ss
57.8
0.27
2.3
75.5
40.6
Minor BPS
70.3
0.63
1.4
77.11
33.5

Associated Gene:

Gene:
CSTF3
Ensembl Gene ID:
ENSAPLG00000007217
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048458
6091621 - 6140480
48860
ENSAPLT00000045199
6091621 - 6140480
48860
ENSAPLT00000007566
6091621 - 6140600
48980