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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61261466_61262461_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61261466 - 61262461
Intron Length:
996

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTGCT
5'SS Class:
major
3'SS Sequence:
TGTATTTTGGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TCTCTTTGTATT
Flanking Amino Acid:
LGKAGVALLSRDLVDLNVLL
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
73.4
35.4
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
64.6
0.33
1.2
67.6
42.6
Minor 5ss
41.5
-0.9
3.1
59.5
45
Minor BPS
46.9
-0.1
1.7
65.05
40.4

Associated Gene:

Gene:
TXNDC16
Ensembl Gene ID:
ENSAPLG00000014927
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015590
61254603 - 61289214
34612