About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_6126393_6128771_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6126393 - 6128771
Intron Length:
2379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATCAAA
5'SS Class:
strong_major
3'SS Sequence:
CACCCTTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTTTCACCC
Flanking Amino Acid:
LWRDYNKYEEGINIHLAKKM
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
76.1
35
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
77.3
0.61
0.8
68.3
37
Minor 5ss
38.8
-1.3
2.8
48.7
47.1
Minor BPS
57.6
0.22
1.8
73.67
37.7

Associated Gene:

Gene:
CSTF3
Ensembl Gene ID:
ENSAPLG00000007217
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048458
6091621 - 6140480
48860
ENSAPLT00000045199
6091621 - 6140480
48860
ENSAPLT00000007566
6091621 - 6140600
48980