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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61265583_61273175_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61265583 - 61273175
Intron Length:
7593

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CTATTTATAACA
Flanking Amino Acid:
TYVEVADHLKGVQGVLLSRV
Intron Amino Acid Position:
449

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
73.9
38
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
88.2
0.86
0.6
81.7
30.3
Minor 5ss
37.1
-1.5
3.3
50.2
46.4
Minor BPS
58.8
0.27
1.6
68.36
38.1

Associated Gene:

Gene:
TXNDC16
Ensembl Gene ID:
ENSAPLG00000014927
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015590
61254603 - 61289214
34612