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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61274142_61279141_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61274142 - 61279141
Intron Length:
5000

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTTTTTTACA
Flanking Amino Acid:
LGVFSTATSKAKEAFVEAGS
Intron Amino Acid Position:
551

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1.1
77.3
37.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
98.8
1.1
0.5
95.2
16.3
Minor 5ss
32.7
-2
3.1
40.9
45.4
Minor BPS
71.2
0.66
1.5
82.45
31.9

Associated Gene:

Gene:
TXNDC16
Ensembl Gene ID:
ENSAPLG00000014927
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015590
61254603 - 61289214
34612