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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61279227_61283642_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61279227 - 61283642
Intron Length:
4416

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTGAGTTGT
5'SS Class:
major
3'SS Sequence:
CCCCCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
AATCCCACACAT
Flanking Amino Acid:
GMYFEDDALALSRKYAVSPP
Intron Amino Acid Position:
579

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1
69.6
37.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
81.6
0.71
0.7
79
26.5
Minor 5ss
39
-1.2
3
55.1
43.5
Minor BPS
41.9
-0.5
2
60.44
42

Associated Gene:

Gene:
TXNDC16
Ensembl Gene ID:
ENSAPLG00000014927
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015590
61254603 - 61289214
34612