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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61283782_61284327_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61283782 - 61284327
Intron Length:
546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TGATGTCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TCCCTCTAAACC
Flanking Amino Acid:
TIRYRLLDTFPEITVQNLPR
Intron Amino Acid Position:
626

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
78
31.1
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
76.6
0.6
1
69.7
41.3
Minor 5ss
37.6
-1.4
2.8
48.3
41.8
Minor BPS
55.1
0.14
1.7
62.68
43.2

Associated Gene:

Gene:
TXNDC16
Ensembl Gene ID:
ENSAPLG00000014927
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015590
61254603 - 61289214
34612