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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61284489_61286131_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61284489 - 61286131
Intron Length:
1643

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
TTTTTCTCACCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
TTTTTCTCACCA
Flanking Amino Acid:
QQAFVPCWLNLKNTPVGRGV
Intron Amino Acid Position:
679

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
72.6
38.2
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
84.3
0.77
0.8
78.9
34.4
Minor 5ss
36.5
-1.5
2.9
48.4
41.7
Minor BPS
63.4
0.42
1.8
79.1
37.4

Associated Gene:

Gene:
TXNDC16
Ensembl Gene ID:
ENSAPLG00000014927
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015590
61254603 - 61289214
34612