Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61303868_61305555_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

61303868 - 61305555

Intron Length:

1688

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGAGTGCC

5'SS Class:

strong_major

3'SS Sequence:

TGCTCTTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GCATCAT

U12 Branch Point Sequence:

CCGGCATCATTT

Flanking Amino Acid:

TFVICSLPFTVCAYMNKFNK

Intron Amino Acid Position:

439

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

0.9

69.7

35.1

Major BPS

57.9

0.2

1.4

44.2

Major PPT

85.1

0.79

0.8

80.1

31.9

Minor 5ss

-2.4

3.1

36.8

40.4

Minor BPS

39.3

-0.7

1.9

48.43

45.1

Associated Gene:

Gene:

PTGER2

Ensembl Gene ID:

ENSAPLG00000026085

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046450

61303625 - 61306869

3245