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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_6133019_6133120_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6133019 - 6133120
Intron Length:
102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTCTG
5'SS Class:
strong_major
3'SS Sequence:
TAAATGTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAT
Flanking Amino Acid:
AALMEYYCSKDKSVAFKIFE
Intron Amino Acid Position:
426

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
74.6
41.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
73
0.52
1
65.8
44.7
Minor 5ss
37.9
-1.4
3
50.1
46.1
Minor BPS
79.5
1
1.2
92.62
29

Associated Gene:

Gene:
CSTF3
Ensembl Gene ID:
ENSAPLG00000007217
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048458
6091621 - 6140480
48860
ENSAPLT00000045199
6091621 - 6140480
48860
ENSAPLT00000007566
6091621 - 6140600
48980