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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_6133224_6134883_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6133224 - 6134883
Intron Length:
1660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAA
U12 Branch Point Sequence:
TTTTCCTCAATG
Flanking Amino Acid:
AYIDYLSHLNEDNNTRVLFE
Intron Amino Acid Position:
460

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
80.5
34.9
Major BPS
73.1
0.58
1
73.8
32.3
Major PPT
85.9
0.81
0.7
84.8
30
Minor 5ss
49.9
-0
2.8
70.4
41.2
Minor BPS
75.6
0.66
1.5
79.83
36.5

Associated Gene:

Gene:
CSTF3
Ensembl Gene ID:
ENSAPLG00000007217
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048458
6091621 - 6140480
48860
ENSAPLT00000045199
6091621 - 6140480
48860
ENSAPLT00000007566
6091621 - 6140600
48980