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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61333881_61333978_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61333881 - 61333978
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCACG
5'SS Class:
major
3'SS Sequence:
CTCTGCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TAGTTTTTCACC
Flanking Amino Acid:
ALAGRIGSAHDDAERPPVNP
Intron Amino Acid Position:
654

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
62.7
43.4
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
72
0.49
0.8
65.4
30.5
Minor 5ss
34.7
-1.7
2.8
42
44.3
Minor BPS
56.8
0.2
1.7
66.39
39.8

Associated Gene:

Gene:
NID2
Ensembl Gene ID:
ENSAPLG00000026347
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032934
61301360 - 61339430
38071
ENSAPLT00000017609
61301360 - 61339390
38031