Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61335892_61336087_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

61335892 - 61336087

Intron Length:

196

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCGCA

5'SS Class:

strong_major

3'SS Sequence:

TTCCCCGTGCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGGTGAC

U12 Branch Point Sequence:

GAGGGGGTGACG

Flanking Amino Acid:

GSTPPRCGNPEPTERPPSMC

Intron Amino Acid Position:

982

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

0.9

71.1

34.7

Major BPS

45.4

-0.2

1.4

34.5

43.7

Major PPT

67.9

0.4

61.1

40.1

Minor 5ss

31.2

-2.2

3.2

38.8

46.5

Minor BPS

30.6

-1.6

2.6

31.11

41.6

Associated Gene:

Gene:

NID2

Ensembl Gene ID:

ENSAPLG00000026347

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032934

61301360 - 61339430

38071

ENSAPLT00000017609

61301360 - 61339390

38031