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Intron Name: Anas_platyrhynchos_platyrhynchos_5_61340704_61341435_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

61340704 - 61341435

Intron Length:

732

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGCAGC

5'SS Class:

strong_major

3'SS Sequence:

GCAACTCTCCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATGTAAA

U12 Branch Point Sequence:

CTTTTTGCAACT

Flanking Amino Acid:

EKHILGFDTGDAVINEAAQI

Intron Amino Acid Position:

171

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.92

0.9

76.2

39.9

Major BPS

66.4

0.41

1.1

67.7

36.5

Major PPT

64.3

0.32

53.9

41.1

Minor 5ss

39.7

-1.2

2.9

52.1

44.7

Minor BPS

49.4

0.04

2.2

74.97

42.5

Associated Gene:

Gene:

RTRAF

Ensembl Gene ID:

ENSAPLG00000016032

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027067

61340549 - 61352972

12424