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Intron Name: Anas_platyrhynchos_platyrhynchos_5_61340704_61345040_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

61340704 - 61345040

Intron Length:

4337

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGT|GTTAATTGT

5'SS Class:

weak_major

3'SS Sequence:

GCAACTCTCCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATGTAAA

U12 Branch Point Sequence:

CTTTTTGCAACT

Flanking Amino Acid:

EVCIHSAQSWYAVINEAAQI

Intron Amino Acid Position:

187

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

53.1

0.07

1.3

57.1

42.5

Major BPS

66.4

0.41

1.1

67.7

36.5

Major PPT

64.3

0.32

53.9

41.1

Minor 5ss

39.6

-1.2

2.9

51.4

45.1

Minor BPS

49.4

0.04

2.2

74.97

42.5

Associated Gene:

Gene:

RTRAF

Ensembl Gene ID:

ENSAPLG00000016032

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016739

61340549 - 61352972

12424