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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61341485_61347645_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61341485 - 61347645
Intron Length:
6161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTCTTTTTAAAG
Flanking Amino Acid:
RHDDYLVMLKGLPVALEKHI
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
78.3
32.5
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
83.7
0.76
0.9
85.8
26
Minor 5ss
43
-0.8
3
58.3
46.6
Minor BPS
65.8
0.36
1.5
67.62
40.4

Associated Gene:

Gene:
RTRAF
Ensembl Gene ID:
ENSAPLG00000016032
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027067
61340549 - 61352972
12424