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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61345138_61347645_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61345138 - 61347645
Intron Length:
2508

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TGGCCTTTAAAT
Flanking Amino Acid:
RHDDYLVMLKAIRILVQERL
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
78.3
32.5
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
89.6
0.89
0.6
84.8
30
Minor 5ss
43
-0.8
3
58.3
46.6
Minor BPS
65.1
0.55
1.4
75.65
40.7

Associated Gene:

Gene:
RTRAF
Ensembl Gene ID:
ENSAPLG00000016032
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016739
61340549 - 61352972
12424