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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61347735_61348731_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61347735 - 61348731
Intron Length:
997

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTTACA
Flanking Amino Acid:
KNAEPLINLDVNNPDFKAGV
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
0.9
76.5
39.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
98.8
1.1
0.5
95.2
16.3
Minor 5ss
36.8
-1.5
3.3
50
46.2
Minor BPS
71.2
0.66
1.5
82.45
31.9

Associated Gene:

Gene:
RTRAF
Ensembl Gene ID:
ENSAPLG00000016032
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027067
61340549 - 61352972
12424
ENSAPLT00000016739
61340549 - 61352972
12424