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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61349889_61351281_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61349889 - 61351281
Intron Length:
1393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTTTTTT
5'SS Class:
major
3'SS Sequence:
TCCTGCTCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAC
U12 Branch Point Sequence:
TCTTCCTTTTCT
Flanking Amino Acid:
SDDWPKAFEKYMKDVNCPFK
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
78.5
31.1
Major BPS
69.5
0.49
1
71.3
30.3
Major PPT
74.5
0.55
0.8
68.7
31.7
Minor 5ss
46.8
-0.3
2.7
66.9
44.3
Minor BPS
48
-0
3.6
84
43

Associated Gene:

Gene:
RTRAF
Ensembl Gene ID:
ENSAPLG00000016032
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027067
61340549 - 61352972
12424
ENSAPLT00000016739
61340549 - 61352972
12424