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Intron Name: Anas_platyrhynchos_platyrhynchos_5_61351407_61352911_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

61351407 - 61352911

Intron Length:

1505

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTGAGGGGC

5'SS Class:

major

3'SS Sequence:

TTTCTCCCCGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTTAT

U12 Branch Point Sequence:

CTCTCTTTATTT

Flanking Amino Acid:

YHNPGGFSCRDETEFRNFIV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.57

59.3

39.8

Major BPS

83.9

0.84

73.9

41.3

Major PPT

82.5

0.73

0.7

77.7

24.2

Minor 5ss

23.7

-3

3.3

23.4

37.6

Minor BPS

62.4

0.47

1.6

74.81

43.2

Associated Gene:

Gene:

RTRAF

Ensembl Gene ID:

ENSAPLG00000016032

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027067

61340549 - 61352972

12424

ENSAPLT00000016739

61340549 - 61352972

12424