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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61373194_61373300_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61373194 - 61373300
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCACCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
CTTTCTTTCACC
Flanking Amino Acid:
RGQSTDSLPQTACRKPKTST
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1
77.2
32.8
Major BPS
77.7
0.69
1
81
30.2
Major PPT
79.8
0.67
0.8
73.6
36.1
Minor 5ss
32.6
-2
3.4
44.1
43.8
Minor BPS
68.7
0.57
1.7
77.59
39

Associated Gene:

Gene:
FRMD6
Ensembl Gene ID:
ENSAPLG00000017328
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038977
61372909 - 61385520
12612