Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_6138900_6139032_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6138900 - 6139032

Intron Length:

133

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTTGTTTT

5'SS Class:

major

3'SS Sequence:

TTTAACAAATCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAA

U12 Branch Point Sequence:

TTTTTTTTAACA

Flanking Amino Acid:

KLLPPPVCFQGPFVQVDELM

Intron Amino Acid Position:

632

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.7

0.68

1.1

81.7

32.3

Major BPS

87.3

0.93

0.8

36.5

Major PPT

63.6

0.31

1.1

61.4

43.2

Minor 5ss

48.6

-0.1

2.4

67.6

43.4

Minor BPS

86.3

1.14

0.8

90.59

23.6

Associated Gene:

Gene:

CSTF3

Ensembl Gene ID:

ENSAPLG00000007217

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048458

6091621 - 6140480

48860

ENSAPLT00000045199

6091621 - 6140480

48860

ENSAPLT00000007566

6091621 - 6140600

48980