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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_6139094_6140271_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6139094 - 6140271
Intron Length:
1178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTGT
5'SS Class:
major
3'SS Sequence:
TCTCTTTCAAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAA
U12 Branch Point Sequence:
TTTTCCCAAATT
Flanking Amino Acid:
EIFRRCKLPDTVDEAVRIIT
Intron Amino Acid Position:
652

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
72.9
39.3
Major BPS
74.2
0.6
0.9
75.7
28
Major PPT
68.8
0.42
1
71.6
31.8
Minor 5ss
44.1
-0.6
2.9
63.9
41.5
Minor BPS
65
0.55
2
88.6
36.6

Associated Gene:

Gene:
CSTF3
Ensembl Gene ID:
ENSAPLG00000007217
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048458
6091621 - 6140480
48860
ENSAPLT00000045199
6091621 - 6140480
48860
ENSAPLT00000007566
6091621 - 6140600
48980