About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61430011_61430098_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61430011 - 61430098
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTGAGTGTT
5'SS Class:
major
3'SS Sequence:
TGTCCTGCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGGTGAT
U12 Branch Point Sequence:
CTCCCGGTGATG
Flanking Amino Acid:
ELLHGEWMVEFYAPWCPACQ
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
76.1
32.8
Major BPS
53.7
0.09
1.4
46.5
47
Major PPT
71.4
0.48
0.9
65.3
36.1
Minor 5ss
35.7
-1.6
3.5
55
43.6
Minor BPS
38.3
-1
2.5
42.95
43.3

Associated Gene:

Gene:
TMX1
Ensembl Gene ID:
ENSAPLG00000025218
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044141
61429143 - 61430244
1102