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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_6144912_6145477_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6144912 - 6145477
Intron Length:
566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
CCATATTCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTAAA
U12 Branch Point Sequence:
TACTCCATATTC
Flanking Amino Acid:
MHLPAFNLKESLA
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1.3
71.8
39.7
Major BPS
58.6
0.22
1.1
59.7
34.6
Major PPT
74.7
0.56
0.9
65.4
40.6
Minor 5ss
34.8
-1.7
2.8
48.5
40.3
Minor BPS
51.7
0.03
1.9
64.4
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017408
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025075
6143299 - 6148979
5681