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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61452698_61463183_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61452698 - 61463183
Intron Length:
10486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
ATAACCCTACTC
Flanking Amino Acid:
ALGAMWKLHKSQLSQALNGL
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
61.3
0.28
1
62
30.6
Major PPT
80.1
0.68
0.7
73.6
24.6
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
47.2
-0.2
1.9
59.37
39.5

Associated Gene:

Gene:
TRIM9
Ensembl Gene ID:
ENSAPLG00000016305
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045198
61451873 - 61479330
27458
ENSAPLT00000031985
61451672 - 61477616
25945
ENSAPLT00000017009
61451873 - 61476724
24852