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Intron Name: Anas_platyrhynchos_platyrhynchos_5_61463841_61466894_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

61463841 - 61466894

Intron Length:

3054

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGCCCT

5'SS Class:

strong_major

3'SS Sequence:

CTTGTCGCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGGCCAT

U12 Branch Point Sequence:

CTTGTCGCCACA

Flanking Amino Acid:

VNKEHEHKLKVVRDQISHCT

Intron Amino Acid Position:

349

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.3

0.81

0.9

71.4

40.3

Major BPS

41.8

-0.5

1.5

43.9

48.6

Major PPT

71.5

0.48

0.9

64.7

36.6

Minor 5ss

35.1

-1.7

3.1

48.4

47.3

Minor BPS

39.3

-0.8

2.5

54.1

45.1

Associated Gene:

Gene:

TRIM9

Ensembl Gene ID:

ENSAPLG00000016305

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045198

61451873 - 61479330

27458

ENSAPLT00000031985

61451672 - 61477616

25945

ENSAPLT00000017009

61451873 - 61476724

24852