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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_614668_619256_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
614668 - 619256
Intron Length:
4589

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGAC
5'SS Class:
strong_major
3'SS Sequence:
CTATTTTAAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
GCATATTCAACT
Flanking Amino Acid:
KLERELRGESDSGTQDETQM
Intron Amino Acid Position:
553

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
78.2
29.5
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
73.1
0.52
1
70.7
38.7
Minor 5ss
32.3
-2
3.3
42.9
44.7
Minor BPS
51.4
0.12
1.7
66.99
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016293
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016998
612390 - 642461
30072