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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61467461_61468688_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61467461 - 61468688
Intron Length:
1228

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
GTTTCCTCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
GTCCCTCTAACT
Flanking Amino Acid:
IHQLDFVQMKVPAPPILQLE
Intron Amino Acid Position:
437

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
78.9
35.3
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
82.8
0.74
0.8
73.9
36.7
Minor 5ss
34
-1.8
3.5
46.6
48.7
Minor BPS
58.7
0.35
1.7
74.99
41.5

Associated Gene:

Gene:
TRIM9
Ensembl Gene ID:
ENSAPLG00000016305
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031985
61451672 - 61477616
25945