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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61475192_61475946_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61475192 - 61475946
Intron Length:
755

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGGCC
5'SS Class:
major
3'SS Sequence:
TCTGCTCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTCAC
U12 Branch Point Sequence:
TCTGCTCCCACA
Flanking Amino Acid:
WFMHNNSHTNRTEGGITKGA
Intron Amino Acid Position:
637

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
71.5
33.9
Major BPS
62.6
0.31
1.2
66.7
39.9
Major PPT
75.2
0.57
0.8
68.7
31.8
Minor 5ss
29.1
-2.4
3.7
41.3
45.5
Minor BPS
41.5
-0.6
2.2
55.53
43.9

Associated Gene:

Gene:
TRIM9
Ensembl Gene ID:
ENSAPLG00000016305
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045198
61451873 - 61479330
27458
ENSAPLT00000031985
61451672 - 61477616
25945
ENSAPLT00000017009
61451873 - 61476724
24852