Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61487391_61487466_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

61487391 - 61487466

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGGGG

5'SS Class:

strong_major

3'SS Sequence:

CCCCCTCGGCCAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GGCTGAC

U12 Branch Point Sequence:

GGGGGCTGACGC

Flanking Amino Acid:

FIREVAKVKQENKVKFALYL

Intron Amino Acid Position:

541

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.7

0.77

0.9

63.9

42.4

Major BPS

49.4

-0

1.3

42.8

41.8

Major PPT

59.2

0.21

52.6

36.7

Minor 5ss

23.2

-3.1

3.2

28.7

43.7

Minor BPS

34.3

-1.2

2.1

36.03

40.7

Associated Gene:

Gene:

PYGL

Ensembl Gene ID:

ENSAPLG00000016327

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036948

61481031 - 61489379

8349

ENSAPLT00000017060

61481031 - 61489515

8485