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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_61491183_61491271_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61491183 - 61491271
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCCCG
5'SS Class:
major
3'SS Sequence:
CTCTCCCGGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCCCAT
U12 Branch Point Sequence:
TCAGCCAGCATC
Flanking Amino Acid:
EAAAHVPITTIYRQFPGFEY
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
53.6
45.1
Major BPS
50.9
0.02
1.3
60.4
37.5
Major PPT
64.7
0.33
1
61.2
35
Minor 5ss
33.2
-1.9
3
40.9
44.9
Minor BPS
40.2
-0.7
2.1
48.63
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002445
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002463
61489879 - 61493886
4008